Research and Teaching Blog
1 Post in December Archive
Stochastic kinetics solution
This post is related to the problem posed in the stochastic kinetics lecture. Attached here (link missing) is the solution to the problem (the .R code). To run the code, you will need this reaction.csv input file. The file is a text description of the reaction as a graph. The format is very simple: nodes are the reaction states, and are described by the line e.g. "node, Pyruvate" or "node, Pyruvate_PDC". State transitions are described by "edge, Pyruvate ...